Mercurial > repos > thomaswollmann > wsi_extract_top_view
changeset 1:257397c40c25 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/wsi_extract_top_view/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author | thomaswollmann |
---|---|
date | Wed, 16 Jan 2019 15:36:04 -0500 |
parents | 9f01fd145af4 |
children | |
files | wsi_extract_top_view.xml |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/wsi_extract_top_view.xml Mon Jan 07 08:38:08 2019 -0500 +++ b/wsi_extract_top_view.xml Wed Jan 16 15:36:04 2019 -0500 @@ -8,11 +8,11 @@ </requirements> <command> <![CDATA[ - python "$__tool_directory__/wsi_extract_top_view.py" '$input' '$output' + python '$__tool_directory__/wsi_extract_top_view.py' '$input' '$output' ]]> </command> <inputs> - <param name="input" type="data" format="svs,tif,ndpi,vms,vmu,scn,mrxs,tiff,svslide,bif" label="Whole Slice Image"/><!--formats taken as listed on https://openslide.org/api/python/--> + <param name="input" type="data" format="svs,svslide,vms,mrxs,tif,tiff" label="Whole Slice Image"/><!--formats taken as listed on https://openslide.org/api/python/--> </inputs> <outputs> <data name="output" format="tiff"/> @@ -25,6 +25,6 @@ </tests> <help>Extracts the top view from a whole-slice image, also known as virtual slide, which are high-resolution images used in digital pathology.</help> <citations> - <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>