Mercurial > repos > timpalpant > java_genomics_toolkit

annotate java-genomics-toolkit/resources/toolConf.xml @ 0:1daf3026d231

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Upload alpha version
author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
1 <?xml version="1.0" encoding="UTF-8"?>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
2 <!-- This is the tool configuration file for the ToolRunner GUI -->
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
3 <tools>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
4 <section name="Converters">
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
5 <tool name="IntervalToWig" class="edu.unc.genomics.converters.IntervalToWig" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
6 <tool name="RomanNumeralize" class="edu.unc.genomics.converters.RomanNumeralize" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
7 </section>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
8
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
9 <section name="NGS">
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
10 <tool name="Autocorrelation" class="edu.unc.genomics.ngs.Autocorrelation" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
11 <tool name="BaseAlignCounts" class="edu.unc.genomics.ngs.BaseAlignCounts" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
12 <tool name="FindAbsoluteMaxima" class="edu.unc.genomics.ngs.FindAbsoluteMaxima" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
13 <tool name="IntervalLengthDistribution" class="edu.unc.genomics.ngs.IntervalLengthDistribution" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
14 <tool name="IntervalStats" class="edu.unc.genomics.ngs.IntervalStats" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
15 <tool name="PowerSpectrum" class="edu.unc.genomics.ngs.PowerSpectrum" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
16 <tool name="RollingReadLength" class="edu.unc.genomics.ngs.RollingReadLength" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
17 </section>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
18
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
19 <section name="Nucleosomes">
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
20 <tool name="FindBoundaryNucleosomes" class="edu.unc.genomics.nucleosomes.FindBoundaryNucleosomes" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
21 <tool name="GreedyCaller" class="edu.unc.genomics.nucleosomes.GreedyCaller" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
22 <tool name="MapDyads" class="edu.unc.genomics.nucleosomes.MapDyads" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
23 <tool name="NRLCalculator" class="edu.unc.genomics.nucleosomes.NRLCalculator" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
24 <tool name="Phasogram" class="edu.unc.genomics.nucleosomes.Phasogram" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
25 </section>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
26
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
27 <section name="Visualization">
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
28 <tool name="IntervalAverager" class="edu.unc.genomics.visualization.IntervalAverager" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
29 <tool name="KMeans" class="edu.unc.genomics.visualization.KMeans" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
30 <tool name="MatrixAligner" class="edu.unc.genomics.visualization.MatrixAligner" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
31 </section>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
32
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
33 <section name="WigMath">
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
34 <tool name="Add" class="edu.unc.genomics.wigmath.Add" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
35 <tool name="Average" class="edu.unc.genomics.wigmath.Average" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
36 <tool name="Divide" class="edu.unc.genomics.wigmath.Divide" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
37 <tool name="GaussianSmooth" class="edu.unc.genomics.wigmath.GaussianSmooth" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
38 <tool name="LogTransform" class="edu.unc.genomics.wigmath.LogTransform" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
39 <tool name="MovingAverageSmooth" class="edu.unc.genomics.wigmath.MovingAverageSmooth" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
40 <tool name="Multiply" class="edu.unc.genomics.wigmath.Multiply" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
41 <tool name="Scale" class="edu.unc.genomics.wigmath.Scale" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
42 <tool name="Subtract" class="edu.unc.genomics.wigmath.Subtract" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
43 <tool name="WigSummary" class="edu.unc.genomics.wigmath.WigSummary" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
44 <tool name="ZScore" class="edu.unc.genomics.wigmath.ZScore" />
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
45 </section>
1daf3026d231 Upload alpha version
timpalpant
parents:
diff changeset
46 </tools>