Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/log4j.properties @ 16:35031c567ece draft

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Add sam_fa_indices.loc.sample to enable DNAProperty and FindNMer tools that require samtools indices to be installed.
author timpalpant
date Sat, 09 Jun 2012 16:06:25 -0400
parents 3e477c7e0e73
children
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4fc118372ae7 Uploaded new version with fixes and broader support for interval files
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1 log4j.rootLogger=info, stdout
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3 log4j.appender.stdout=org.apache.log4j.ConsoleAppender
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4 log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
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6 # Pattern to output the caller's file name and line number.
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4fc118372ae7 Uploaded new version with fixes and broader support for interval files
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7 log4j.appender.stdout.layout.ConversionPattern=%m%n
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9 # Only output errors from the BigWig library
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3e477c7e0e73 Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
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10 log4j.logger.org.broad.igv.bbfile=ERROR
3e477c7e0e73 Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
timpalpant
parents: 7
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11 # Only output errors from java-genomics-io
3e477c7e0e73 Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
timpalpant
parents: 7
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12 log4j.logger.edu.unc.genomics.io=ERROR