Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/RomanNumeralize.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
| author | timpalpant |
|---|---|
| date | Sat, 09 Jun 2012 16:03:59 -0400 |
| parents | 81d5b81fb3c2 |
| children |
| rev | line source |
|---|---|
| 4 | 1 <tool id="RomanNumeralize" name="Convert Arabic to Roman numerals" version="1.0.0"> |
| 2 <description>on any file</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh converters.RomanNumeralize -i $input -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" label="Convert Arabic integer chromosome coordinates in" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data name="output" format="input" /> | |
| 9 </outputs> | |
| 10 <tests> | |
| 11 <test> | |
| 12 <param name="input" value="romanNumeralize.input"/> | |
| 13 <output name="output" file="romanNumeralize.output"/> | |
| 14 </test> | |
| 15 </tests> | |
| 16 | |
| 17 <help> | |
|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
4
diff
changeset
|
18 |
|
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
4
diff
changeset
|
19 This tool scans any file with chromosomal coordinates of the form "chr5" and replaces them with "chrV". |
| 4 | 20 |
| 21 </help> | |
| 22 </tool> |