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view galaxy-conf/RomanNumeralize.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents 81d5b81fb3c2
children
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<tool id="RomanNumeralize" name="Convert Arabic to Roman numerals" version="1.0.0">
  <description>on any file</description>
  <command interpreter="sh">galaxyToolRunner.sh converters.RomanNumeralize -i $input -o $output</command>
  <inputs>
      <param name="input" type="data" label="Convert Arabic integer chromosome coordinates in" />
  </inputs>
  <outputs>
      <data name="output" format="input" />
  </outputs>
  <tests>
    <test>
      <param name="input" value="romanNumeralize.input"/>
      <output name="output" file="romanNumeralize.output"/>
    </test>
  </tests>
  
<help>
  
This tool scans any file with chromosomal coordinates of the form "chr5" and replaces them with "chrV".

</help>
</tool>