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1 <tool id="GaussianSmoother" name="Gaussian smooth" version="1.0.0">
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2 <description>a (Big)Wig file</description>
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3 <command interpreter="sh">galaxyToolRunner.sh wigmath.GaussianSmooth -i $input -s $S -o $output</command>
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4 <inputs>
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5 <param name="input" type="data" format="bigwig,wig" label="Smooth the data in" />
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6 <param name="S" type="integer" value="20" optional="true" label="Standard deviation of the Gaussian in base pairs" />
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7 </inputs>
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8 <outputs>
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9 <data format="wig" name="output" metadata_source="input" />
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10 </outputs>
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11 <tests>
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12 <!--<test>
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13 <param name="input" value="test.wig"/>
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14 <param name="dbkey" value="sacCer2"/>
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15 <param name="S" value="20"/>
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16 <param name="W" value="3"/>
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17 <output name="output" file="smoother.output1"/>
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18 </test>
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19 <test>
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20 <param name="input" value="test.bw"/>
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21 <param name="dbkey" value="sacCer2"/>
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22 <param name="S" value="20"/>
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23 <param name="W" value="3"/>
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24 <output name="output" file="smoother.output1"/>
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25 </test>
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26 <test>
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27 <param name="input" value="test.wig"/>
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28 <param name="dbkey" value="sacCer2"/>
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29 <param name="S" value="10"/>
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30 <param name="W" value="2"/>
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31 <output name="output" file="smoother.output2"/>
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32 </test>
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33 <test>
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34 <param name="input" value="test.bw"/>
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35 <param name="dbkey" value="sacCer2"/>
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36 <param name="S" value="10"/>
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37 <param name="W" value="2"/>
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38 <output name="output" file="smoother.output2"/>
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39 </test>
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40 <test>
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41 <param name="input" value="test.wig"/>
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42 <param name="dbkey" value="sacCer2"/>
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43 <param name="S" value="50"/>
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44 <param name="W" value="1"/>
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45 <output name="output" file="smoother.output3"/>
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46 </test>
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47 <test>
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48 <param name="input" value="test.bw"/>
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49 <param name="dbkey" value="sacCer2"/>
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50 <param name="S" value="5"/>
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51 <param name="W" value="1"/>
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52 <output name="output" file="smoother.output3"/>
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53 </test>-->
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54 </tests>
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55
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56 <help>
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57 </help>
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58 </tool>
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