Mercurial > repos > timpalpant > java_genomics_toolkit

changeset 6:422ac2bbb274

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Uploaded
author timpalpant
date Tue, 14 Feb 2012 18:40:50 -0500
parents 604c98e58034
children 4fc118372ae7
files dist/java-genomics-toolkit.jar galaxy-conf/BaseAlignCounts.xml lib/java-genomics-io.jar
diffstat 3 files changed, 2 insertions(+), 2 deletions(-) [+]
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Binary file dist/java-genomics-toolkit.jar has changed
--- a/galaxy-conf/BaseAlignCounts.xml	Tue Feb 14 13:04:54 2012 -0500
+++ b/galaxy-conf/BaseAlignCounts.xml	Tue Feb 14 18:40:50 2012 -0500
@@ -2,7 +2,7 @@
   <description>of sequencing reads</description>
   <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command>
   <inputs>
-    <param name="input" type="data" format="bam,sam,bed,bedgraph" label="Sequencing reads" />
+    <param name="input" type="data" format="bam" label="Sequencing reads" />
     <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" />
   </inputs>
   <outputs>
@@ -12,6 +12,6 @@
   <help>
     .. class:: warningmark
     
-    This tool requires sequencing reads in SAM/BAM/Bed/BedGraph format.
+    This tool requires sequencing reads in BAM format.
   </help>
 </tool>
Binary file lib/java-genomics-io.jar has changed