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1 <tool id="Phasogram" name="Make phasogram" version="1.0.0">
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2 <description>of dyads</description>
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3 <command interpreter="ruby">phasogram.rb -i $input -m $max -o $output</command>
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4 <inputs>
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5 <param name="input" type="data" format="bigwig,wig" label="Dyads BigWig file" />
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6 <param name="max" type="integer" value="1000" label="Maximum phase shift (bp)" />
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7 </inputs>
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8 <outputs>
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9 <data name="output" format="tabular" />
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10 </outputs>
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11
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12 <help>
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13 .. class:: warningmark
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14
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15 This tool requires mapped dyads in BigWig format.
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16 </help>
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17 </tool>
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