Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/GeneTrackToBedGraph.xml @ 12:81d5b81fb3c2 draft
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
| author | timpalpant |
|---|---|
| date | Wed, 25 Apr 2012 16:53:48 -0400 |
| parents | b1952a90d4bf |
| children | eb53be9a09f4 |
| rev | line source |
|---|---|
| 11 | 1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0"> |
| 2 <description>converter</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="genetrack" label="Input GeneTrack index" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data name="output" format="bedgraph" metadata_source="input" /> | |
| 9 </outputs> | |
| 10 | |
| 11 <help> | |
| 12 | |
|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
11
diff
changeset
|
13 This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file. |
| 11 | 14 |
|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
11
diff
changeset
|
15 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html |
| 11 | 16 |
| 17 .. class:: warningmark | |
| 18 | |
| 19 This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. | |
|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
11
diff
changeset
|
20 |
| 11 | 21 </help> |
| 22 </tool> |