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1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0">
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2 <description>converter</description>
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3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command>
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4 <inputs>
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5 <param name="input" type="data" format="genetrack" label="Input GeneTrack index" />
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6 </inputs>
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7 <outputs>
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8 <data name="output" format="bedgraph" metadata_source="input" />
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9 </outputs>
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10
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11 <help>
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12
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13 .. class:: warningmark
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14
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15 This tool will sum the counts from the forward and reverse strands in a GeneTrack index to create a BedGraph file.
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16
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17 .. class:: warningmark
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18
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19 This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.
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20 </help>
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21 </tool>
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