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annotate galaxy-conf/GeneTrackToWig.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents b1952a90d4bf
children eb53be9a09f4
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1 <tool id="GeneTrackToWig" name="GeneTrack to Wig" version="1.0.0">
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2 <description>converter</description>
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3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToWig -i $input -s $shift $zero -a ${chromInfo} -o $output</command>
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4 <inputs>
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5 <param name="input" type="data" format="genetrack" label="Input GeneTrack index" />
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6 <param name="shift" type="integer" value="0" optional="true" label="Shift +/- strand counts by this amount when merging" />
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7 <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" />
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8 </inputs>
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9 <outputs>
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10 <data name="output" format="wig" metadata_source="input" />
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11 </outputs>
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13 <help>
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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15 This tool will convert GeneTrack_ format files into Wig files, optionally offsetting the + and - strand counts by a specified value before merging them.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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17 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html
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19 .. class:: warningmark
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21 This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.
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23 </help>
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24 </tool>