annotate galaxy-conf/IntervalStats.xml @ 11:b1952a90d4bf

Uploaded
author timpalpant
date Mon, 09 Apr 2012 11:50:23 -0400
parents 4b32ed5d4a1b
children 81d5b81fb3c2
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
1 <tool id="IntervalStats" name="Compute window statistics" version="1.0.0">
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
2 <description>on data in a Wiggle file</description>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
3 <command interpreter="sh">
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
4 galaxyToolRunner.sh ngs.IntervalStats -l $windows -o $output
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
5 #for $input in $inputs
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
6 ${input.file}
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
7 #end for
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
8 </command>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
9 <inputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
10 <repeat name="inputs" title="BigWig file">
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
11 <param name="file" type="data" format="bigwig,wig" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
12 </repeat>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
13 <param format="bed,bedgraph,gff" name="windows" type="data" label="List of intervals" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
14 <!-- TODO: Implement other statistics
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
15 <param name="stat" type="select" optional="true" label="For each window, compute the">
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
16 <option value="mean">Mean</option>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
17 <option value="median">Median</option>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
18 <option value="max">Max</option>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
19 <option value="min">Min</option>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
20 </param> -->
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
21 </inputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
22 <outputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
23 <data format="tabular" name="output" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
24 </outputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
25
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
26 <help>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
27 .. class:: warningmark
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
28
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
29 This tool requires Wiggle/BigWig input data.
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
30 </help>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
31 </tool>