--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/IntervalStats.xml	Tue Feb 14 00:59:33 2012 -0500
@@ -0,0 +1,31 @@
+<tool id="IntervalStats" name="Compute window statistics" version="1.0.0">
+  <description>on data in a Wiggle file</description>
+  <command interpreter="sh">
+    galaxyToolRunner.sh ngs.IntervalStats -l $windows -o $output
+      #for $input in $inputs
+        ${input.file}
+      #end for
+  </command>
+  <inputs>
+      <repeat name="inputs" title="BigWig file">
+        <param name="file" type="data" format="bigwig,wig" />
+      </repeat>
+      <param format="bed,bedgraph,gff" name="windows" type="data" label="List of intervals" />
+      <!-- TODO: Implement other statistics
+      <param name="stat" type="select" optional="true" label="For each window, compute the">
+        <option value="mean">Mean</option>
+        <option value="median">Median</option>
+        <option value="max">Max</option>
+        <option value="min">Min</option>
+      </param> -->
+  </inputs>
+  <outputs>
+      <data format="tabular" name="output" />
+  </outputs>
+  
+<help>
+.. class:: warningmark
+
+This tool requires Wiggle/BigWig input data.
+</help>
+</tool>