Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/IntervalStats.xml @ 4:4b32ed5d4a1b
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| author | timpalpant |
|---|---|
| date | Tue, 14 Feb 2012 00:59:33 -0500 |
| parents | |
| children | 81d5b81fb3c2 |
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| 3:4b610dc8f6ba | 4:4b32ed5d4a1b |
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| 1 <tool id="IntervalStats" name="Compute window statistics" version="1.0.0"> | |
| 2 <description>on data in a Wiggle file</description> | |
| 3 <command interpreter="sh"> | |
| 4 galaxyToolRunner.sh ngs.IntervalStats -l $windows -o $output | |
| 5 #for $input in $inputs | |
| 6 ${input.file} | |
| 7 #end for | |
| 8 </command> | |
| 9 <inputs> | |
| 10 <repeat name="inputs" title="BigWig file"> | |
| 11 <param name="file" type="data" format="bigwig,wig" /> | |
| 12 </repeat> | |
| 13 <param format="bed,bedgraph,gff" name="windows" type="data" label="List of intervals" /> | |
| 14 <!-- TODO: Implement other statistics | |
| 15 <param name="stat" type="select" optional="true" label="For each window, compute the"> | |
| 16 <option value="mean">Mean</option> | |
| 17 <option value="median">Median</option> | |
| 18 <option value="max">Max</option> | |
| 19 <option value="min">Min</option> | |
| 20 </param> --> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="tabular" name="output" /> | |
| 24 </outputs> | |
| 25 | |
| 26 <help> | |
| 27 .. class:: warningmark | |
| 28 | |
| 29 This tool requires Wiggle/BigWig input data. | |
| 30 </help> | |
| 31 </tool> |