Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/RollingReadLength.xml @ 10:d063d22f4e80
Uploaded
| author | timpalpant |
|---|---|
| date | Sat, 17 Mar 2012 08:11:55 -0400 |
| parents | 9266d807ca85 |
| children | b1952a90d4bf |
| rev | line source |
|---|---|
| 4 | 1 <tool id="RollingReadLength" name="Compute read length" version="1.0.0"> |
| 2 <description>from paired-end sequencing reads</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> | |
| 4 <inputs> | |
|
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4fc118372ae7
Uploaded new version with fixes and broader support for interval files
timpalpant
parents:
4
diff
changeset
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5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" /> |
| 4 | 6 </inputs> |
| 7 <outputs> | |
| 8 <data format="wig" name="output" /> | |
| 9 </outputs> | |
| 10 | |
| 11 <help> | |
| 12 .. class:: warningmark | |
| 13 | |
| 9 | 14 This tool requires paired-end SAM, BAM, or Bed formatted data. Using single-end data will result in a constant read length. |
| 4 | 15 |
| 16 .. class:: warningmark | |
| 17 | |
| 18 This tool was contributed by Timothy Palpant. | |
| 19 </help> | |
| 20 </tool> |