diff galaxy-conf/RollingReadLength.xml @ 4:4b32ed5d4a1b

Uploaded
author timpalpant
date Tue, 14 Feb 2012 00:59:33 -0500
parents
children 4fc118372ae7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/RollingReadLength.xml	Tue Feb 14 00:59:33 2012 -0500
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+<tool id="RollingReadLength" name="Compute read length" version="1.0.0">
+  <description>from paired-end sequencing reads</description>
+  <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
+  <inputs>
+      <param format="bam" name="input" type="data" label="Mapped reads" />
+  </inputs>
+  <outputs>
+      <data format="wig" name="output" />
+  </outputs>
+  
+<help>
+.. class:: warningmark
+
+This tool requires paired-end BAM formatted data. Using single-end data will result in a constant read length.
+
+.. class:: warningmark
+
+This tool was contributed by Timothy Palpant.
+</help>
+</tool>