<tool id="RollingReadLength" name="Compute read length" version="1.0.0">
  <description>from paired-end sequencing reads</description>
  <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
  <inputs>
      <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" />
  </inputs>
  <outputs>
      <data format="wig" name="output" />
  </outputs>
  
<help>
.. class:: warningmark

This tool requires paired-end BAM formatted data. Using single-end data will result in a constant read length.

.. class:: warningmark

This tool was contributed by Timothy Palpant.
</help>
</tool>