Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/RollingReadLength.xml @ 7:4fc118372ae7

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Uploaded new version with fixes and broader support for interval files
author timpalpant
date Sun, 19 Feb 2012 01:54:28 -0500
parents 4b32ed5d4a1b
children 9266d807ca85
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6:422ac2bbb274 7:4fc118372ae7
1 <tool id="RollingReadLength" name="Compute read length" version="1.0.0"> 1 <tool id="RollingReadLength" name="Compute read length" version="1.0.0">
2 <description>from paired-end sequencing reads</description> 2 <description>from paired-end sequencing reads</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="bam" name="input" type="data" label="Mapped reads" /> 5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" />
6 </inputs> 6 </inputs>
7 <outputs> 7 <outputs>
8 <data format="wig" name="output" /> 8 <data format="wig" name="output" />
9 </outputs> 9 </outputs>
10 10