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1 package edu.unc.genomics;
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2
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3 import java.awt.BorderLayout;
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4 import java.awt.FlowLayout;
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5
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6 import javax.swing.JButton;
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7 import javax.swing.JDialog;
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8 import javax.swing.JFileChooser;
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9 import javax.swing.JFrame;
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10 import javax.swing.JOptionPane;
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11 import javax.swing.JPanel;
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12 import javax.swing.JScrollPane;
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13 import javax.swing.JTable;
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14 import javax.swing.border.EmptyBorder;
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15
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16 import org.apache.log4j.Logger;
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17
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18 import java.awt.event.ActionListener;
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19 import java.awt.event.ActionEvent;
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20 import java.io.IOException;
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21 import java.nio.file.Path;
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22 import java.util.zip.DataFormatException;
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23
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24 /**
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25 * View for AssemblyManager
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26 *
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27 * @author timpalpant
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28 *
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29 */
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30 public class AssemblyManagerDialog extends JDialog {
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31
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32 public static final int DEFAULT_WIDTH = 400;
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33 public static final int DEFAULT_HEIGHT = 500;
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34
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35 private static final long serialVersionUID = -1461628562713621064L;
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36 private static final Logger log = Logger.getLogger(AssemblyManagerDialog.class);
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37
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38 private final JPanel contentPanel = new JPanel();
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39 private final JFileChooser fcCustomAssembly = new JFileChooser();
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40 private final JTable assembliesTable = new JTable();
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41
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42 private AssemblyTableModel model;
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43
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44 /**
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45 * Create the dialog.
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46 */
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47 public AssemblyManagerDialog(JFrame parent) {
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48 super(parent, "Assembly Manager", true);
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49
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50 setSize(DEFAULT_WIDTH, DEFAULT_HEIGHT);
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51 int centeredX = parent.getX() + (parent.getWidth()-getWidth()) / 2;
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52 int centeredY = parent.getY() + (parent.getHeight()-getHeight()) / 2;
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53 setLocation(centeredX, centeredY);
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54
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55 getContentPane().setLayout(new BorderLayout());
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56 contentPanel.setBorder(new EmptyBorder(5, 5, 5, 5));
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57 getContentPane().add(contentPanel, BorderLayout.CENTER);
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58 contentPanel.setLayout(new BorderLayout(0, 0));
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59
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60 // Initialize the assemblies list
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61 model = new AssemblyTableModel(AssemblyManager.getAvailableAssemblies());
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62 assembliesTable.setModel(model);
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63 assembliesTable.setRowSelectionAllowed(true);
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64 JScrollPane scrollPane = new JScrollPane(assembliesTable);
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65 assembliesTable.setFillsViewportHeight(true);
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66 contentPanel.add(scrollPane);
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67
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68 JPanel buttonPane = new JPanel();
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69 buttonPane.setLayout(new FlowLayout(FlowLayout.RIGHT));
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70 getContentPane().add(buttonPane, BorderLayout.SOUTH);
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71
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72 JButton removeAssemblyButton = new JButton("Remove");
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73 removeAssemblyButton.setActionCommand("RemoveAssembly");
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74 removeAssemblyButton.addActionListener(new ActionListener() {
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75 public void actionPerformed(ActionEvent e) {
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76 removeCustomAssembly();
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77 }
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78 });
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79 buttonPane.add(removeAssemblyButton);
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80
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81 JButton loadAssemblyButton = new JButton("Load Custom Assembly");
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82 loadAssemblyButton.setActionCommand("LoadAssembly");
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83 loadAssemblyButton.addActionListener(new ActionListener() {
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84 public void actionPerformed(ActionEvent e) {
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85 loadCustomAssembly();
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86 }
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87 });
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88 buttonPane.add(loadAssemblyButton);
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89
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90 JButton doneButton = new JButton("Done");
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91 doneButton.setActionCommand("Done");
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92 doneButton.addActionListener(new ActionListener() {
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93 public void actionPerformed(ActionEvent e) {
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94 closeDialog();
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95 }
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96 });
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97 buttonPane.add(doneButton);
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98 getRootPane().setDefaultButton(doneButton);
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99 }
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100
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101 private void removeCustomAssembly() {
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102 for (int row : assembliesTable.getSelectedRows()) {
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103 try {
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104 Assembly a = model.getRow(row);
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105 AssemblyManager.deleteAssembly(a);
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106 model.removeRow(row);
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107 } catch (IOException e) {
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108 log.error("Error deleting Assembly");
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109 e.printStackTrace();
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110 JOptionPane.showMessageDialog(this, "Error deleting assembly", "Assembly Manager Error", JOptionPane.ERROR_MESSAGE);
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111 }
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112 }
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113 }
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114
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115 private void loadCustomAssembly() {
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116 int returnVal = fcCustomAssembly.showOpenDialog(this);
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117 if (returnVal == JFileChooser.APPROVE_OPTION) {
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118 Path assemblyFile = fcCustomAssembly.getSelectedFile().toPath();
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119 try {
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120 Assembly a = AssemblyManager.loadCustomAssembly(assemblyFile);
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121 // Add it to the assemblies list model
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122 model.addAssembly(a);
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123 } catch (IOException | DataFormatException e) {
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124 log.error("Error loading custom assembly: " + assemblyFile);
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125 e.printStackTrace();
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126 JOptionPane.showMessageDialog(this, "Error loading custom assembly", "Assembly Manager Error", JOptionPane.ERROR_MESSAGE);
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127 }
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128 }
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129 }
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130
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131 private void closeDialog() {
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132 this.dispose();
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133 }
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134
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135 }
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