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1 package edu.unc.genomics;
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2
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3 import java.util.List;
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4
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5 import javax.swing.table.AbstractTableModel;
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6
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7 /**
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8 * Model for the AssemblyManagerDialog table view
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9 *
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10 * @author timpalpant
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11 *
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12 */
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13 public class AssemblyTableModel extends AbstractTableModel {
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14
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15 private static final long serialVersionUID = 8225453782461913732L;
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16
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17 private static final String[] COLUMN_NAMES = { "Name", "# Contigs" };
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18
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19 private final List<Assembly> assemblies;
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20
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21 public AssemblyTableModel(List<Assembly> assemblies) {
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22 this.assemblies = assemblies;
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23 }
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24
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25 /* (non-Javadoc)
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26 * @see javax.swing.table.AbstractTableModel#getColumnName(int)
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27 */
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28 @Override
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29 public String getColumnName(int col) {
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30 return COLUMN_NAMES[col];
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31 }
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32
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33 /* (non-Javadoc)
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34 * @see javax.swing.table.AbstractTableModel#isCellEditable(int, int)
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35 */
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36 @Override
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37 public boolean isCellEditable(int row, int col) {
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38 return false;
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39 }
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40
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41 /* (non-Javadoc)
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42 * @see javax.swing.table.TableModel#getRowCount()
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43 */
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44 @Override
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45 public int getRowCount() {
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46 return assemblies.size();
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47 }
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48
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49 /* (non-Javadoc)
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50 * @see javax.swing.table.TableModel#getColumnCount()
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51 */
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52 @Override
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53 public int getColumnCount() {
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54 return 2;
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55 }
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56
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57 /* (non-Javadoc)
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58 * @see javax.swing.table.TableModel#getValueAt(int, int)
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59 */
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60 @Override
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61 public Object getValueAt(int rowIndex, int columnIndex) {
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62 Assembly a = assemblies.get(rowIndex);
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63 if (columnIndex == 0) {
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64 return a.toString();
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65 } else if (columnIndex == 1) {
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66 return a.chromosomes().size();
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67 } else {
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68 return null;
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69 }
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70 }
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71
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72 public Assembly getRow(int rowIndex) {
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73 return assemblies.get(rowIndex);
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74 }
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75
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76 public boolean containsAssembly(Assembly a) {
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77 String aName = a.toString();
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78 for (Assembly assembly : assemblies) {
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79 if (assembly.toString().equalsIgnoreCase(aName)) {
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80 return true;
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81 }
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82 }
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83
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84 return false;
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85 }
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86
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87 public void addAssembly(Assembly a) {
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88 assemblies.add(a);
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89 fireTableRowsInserted(assemblies.size()-1, assemblies.size()-1);
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90 }
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91
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92 public void removeRow(int rowIndex) {
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93 assemblies.remove(rowIndex);
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94 fireTableRowsDeleted(rowIndex, rowIndex);
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95 }
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96
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97 }
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