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1 package edu.unc.genomics;
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2
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3 import java.io.IOException;
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4 import java.nio.file.Path;
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5
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6 import com.beust.jcommander.IStringConverter;
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7 import com.beust.jcommander.ParameterException;
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8
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9 import edu.unc.genomics.io.IntervalFile;
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10
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11 /**
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12 * @author timpalpant
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13 *
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14 */
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15 public class IntervalFileConverter implements IStringConverter<IntervalFile<? extends Interval>> {
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16
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17 @Override
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18 public IntervalFile<? extends Interval> convert(String value) throws ParameterException {
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19 PathConverter converter = new PathConverter();
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20 Path p = converter.convert(value);
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21 try {
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22 return IntervalFile.autodetect(p);
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23 } catch (IOException e) {
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24 throw new ParameterException("IOException while attempting to autodetect interval file type");
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25 }
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26 }
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27
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28 }
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