Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/GeneTrackToBedGraph.xml @ 14:f58706d4d421 draft
Uploaded
| author | timpalpant |
|---|---|
| date | Sat, 19 May 2012 10:40:16 -0400 |
| parents | eb53be9a09f4 |
| children | 3e477c7e0e73 |
| rev | line source |
|---|---|
| 11 | 1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0"> |
| 2 <description>converter</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> | |
| 4 <inputs> | |
| 13 | 5 <param name="input" type="data" format="tabular" label="Input GeneTrack index" /> |
| 11 | 6 </inputs> |
| 7 <outputs> | |
| 8 <data name="output" format="bedgraph" metadata_source="input" /> | |
| 9 </outputs> | |
| 13 | 10 <tests> |
| 11 <test> | |
| 12 <param name="input" value="test.genetrack" ftype="tabular"/> | |
| 13 <output name="output" file="geneTrackToBedGraph.bedGraph"/> | |
| 14 </test> | |
| 15 </tests> | |
| 11 | 16 <help> |
| 17 | |
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81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
11
diff
changeset
|
18 This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file. |
| 11 | 19 |
|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
11
diff
changeset
|
20 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html |
| 11 | 21 |
| 22 .. class:: warningmark | |
| 23 | |
| 24 This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. | |
|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
11
diff
changeset
|
25 |
| 11 | 26 </help> |
| 27 </tool> |