annotate galaxy-conf/LogTransform.xml @ 14:f58706d4d421 draft

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author timpalpant
date Sat, 19 May 2012 10:40:16 -0400
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1 <tool id="Logger" name="Log transform" version="1.0.0">
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2 <description>a (Big)Wig file</description>
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3 <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command>
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4 <inputs>
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5 <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
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6 <param name="base" type="integer" value="2" label="Logarithm base" />
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7 </inputs>
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8 <outputs>
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9 <data format="wig" name="output" metadata_source="input" />
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10 </outputs>
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11 <tests>
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12 <test>
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13 <param name="input" value="wigmath1.wig"/>
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14 <param name="base" value="2"/>
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15 <output name="output" file="logger1.wig"/>
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16 </test>
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17 <test>
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18 <param name="input" value="wigmath2.wig"/>
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19 <param name="base" value="3"/>
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20 <output name="output" file="logger2.wig"/>
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21 </test>
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22 <test>
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23 <param name="input" value="wigmath3.wig"/>
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24 <param name="base" value="10"/>
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25 <output name="output" file="logger3.wig"/>
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26 </test>
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27 <test>
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28 <param name="input" value="wigmath1.bw"/>
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29 <param name="base" value="2"/>
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30 <output name="output" file="logger4.wig"/>
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31 </test>
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32 <test>
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33 <param name="input" value="wigmath2.bw"/>
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34 <param name="base" value="3"/>
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35 <output name="output" file="logger5.wig"/>
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36 </test>
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37 <test>
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38 <param name="input" value="wigmath3.bw"/>
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39 <param name="base" value="10"/>
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40 <output name="output" file="logger6.wig"/>
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41 </test>
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42 </tests>
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44 <help>
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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46 .. class:: infomark
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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48 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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49
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50 </help>
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51 </tool>