view galaxy-conf/LogTransform.xml @ 14:f58706d4d421 draft

Uploaded
author timpalpant
date Sat, 19 May 2012 10:40:16 -0400
parents eb53be9a09f4
children 3e477c7e0e73
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<tool id="Logger" name="Log transform" version="1.0.0">
  <description>a (Big)Wig file</description>
  <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command>
  <inputs>
    <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
    <param name="base" type="integer" value="2" label="Logarithm base" />
  </inputs>
  <outputs>
    <data format="wig" name="output" metadata_source="input" />
  </outputs>
  <tests>
	  <test>
	    <param name="input" value="wigmath1.wig"/>
	    <param name="base" value="2"/>
	    <output name="output" file="logger1.wig"/>
	  </test>
	  <test>
	    <param name="input" value="wigmath2.wig"/>
	    <param name="base" value="3"/>
	    <output name="output" file="logger2.wig"/>
	  </test>
	  <test>
	    <param name="input" value="wigmath3.wig"/>
	    <param name="base" value="10"/>
	    <output name="output" file="logger3.wig"/>
	  </test>
	  <test>
	    <param name="input" value="wigmath1.bw"/>
	    <param name="base" value="2"/>
	    <output name="output" file="logger4.wig"/>
	  </test>
	  <test>
	    <param name="input" value="wigmath2.bw"/>
	    <param name="base" value="3"/>
	    <output name="output" file="logger5.wig"/>
	  </test>
	  <test>
	    <param name="input" value="wigmath3.bw"/>
	    <param name="base" value="10"/>
	    <output name="output" file="logger6.wig"/>
	  </test>
  </tests>
  
  <help>

.. class:: infomark

**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
    
  </help>
</tool>