Mercurial > repos > timpalpant > java_genomics_toolkit
comparison java-genomics-toolkit/galaxyToolConf.xml @ 0:1daf3026d231
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author | timpalpant |
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date | Mon, 13 Feb 2012 21:55:55 -0500 |
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-1:000000000000 | 0:1daf3026d231 |
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1 <!-- Add to galaxy/tool_conf.xml within the <toolbox></toolbox> section --> | |
2 <label name="Java Genomics Toolkit" /> | |
3 <section name="Converters" id="java-genomics-toolkit-converters"> | |
4 <tool file="java-genomics-toolkit/galaxy-conf/IntervalToWig.xml" /> | |
5 <tool file="java-genomics-toolkit/galaxy-conf/RomanNumeralize.xml" /> | |
6 </section> | |
7 <section name="Nucleosomes" id="java-genomics-toolkit-nucleosomes"> | |
8 <tool file="java-genomics-toolkit/galaxy-conf/FindBoundaryNucleosomes.xml" /> | |
9 <tool file="java-genomics-toolkit/galaxy-conf/GreedyCaller.xml" /> | |
10 <tool file="java-genomics-toolkit/galaxy-conf/MapDyads.xml" /> | |
11 <tool file="java-genomics-toolkit/galaxy-conf/NRLCalculator.xml" /> | |
12 <tool file="java-genomics-toolkit/galaxy-conf/Phasogram.xml" /> | |
13 </section> | |
14 <section name="NGS" id="java-genomics-toolkit-ngs"> | |
15 <tool file="java-genomics-toolkit/other-tools/Autocorrelation.xml" /> | |
16 <tool file="java-genomics-toolkit/galaxy-conf/BaseAlignCounts.xml" /> | |
17 <tool file="java-genomics-toolkit/galaxy-conf/FindAbsoluteMaxima.xml" /> | |
18 <tool file="java-genomics-toolkit/galaxy-conf/IntervalLengthDistribution.xml" /> | |
19 <tool file="java-genomics-toolkit/galaxy-conf/IntervalStats.xml" /> | |
20 <tool file="java-genomics-toolkit/galaxy-conf/PowerSpectrum.xml" /> | |
21 <tool file="java-genomics-toolkit/galaxy-conf/RollingReadLength.xml" /> | |
22 </section> | |
23 <section name="WigMath" id="java-genomics-toolkit-wigmath"> | |
24 <tool file="java-genomics-toolkit/galaxy-conf/Add.xml" /> | |
25 <tool file="java-genomics-toolkit/galaxy-conf/Average.xml" /> | |
26 <tool file="java-genomics-toolkit/galaxy-conf/Divide.xml" /> | |
27 <tool file="java-genomics-toolkit/galaxy-conf/GaussianSmooth.xml" /> | |
28 <tool file="java-genomics-toolkit/galaxy-conf/LogTransform.xml" /> | |
29 <tool file="java-genomics-toolkit/galaxy-conf/MovingAverageSmooth.xml" /> | |
30 <tool file="java-genomics-toolkit/galaxy-conf/Multiply.xml" /> | |
31 <tool file="java-genomics-toolkit/galaxy-conf/Scale.xml" /> | |
32 <tool file="java-genomics-toolkit/galaxy-conf/Subtract.xml" /> | |
33 <tool file="java-genomics-toolkit/galaxy-conf/WigSummary.xml" /> | |
34 <tool file="java-genomics-toolkit/galaxy-conf/ZScore.xml" /> | |
35 </section> | |
36 <section name="Visualization" id="java-genomics-toolkit-visualization"> | |
37 <tool file="java-genomics-toolkit/galaxy-conf/IntervalAverager.xml" /> | |
38 <tool file="java-genomics-toolkit/galaxy-conf/KMeans.xml" /> | |
39 <tool file="java-genomics-toolkit/galaxy-conf/MatrixAligner.xml" /> | |
40 <tool file="java-genomics-toolkit/galaxy-conf/StripMatrix.xml" /> | |
41 </section> |