comparison java-genomics-toolkit/galaxyToolConf.xml @ 0:1daf3026d231

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author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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1 <!-- Add to galaxy/tool_conf.xml within the <toolbox></toolbox> section -->
2 <label name="Java Genomics Toolkit" />
3 <section name="Converters" id="java-genomics-toolkit-converters">
4 <tool file="java-genomics-toolkit/galaxy-conf/IntervalToWig.xml" />
5 <tool file="java-genomics-toolkit/galaxy-conf/RomanNumeralize.xml" />
6 </section>
7 <section name="Nucleosomes" id="java-genomics-toolkit-nucleosomes">
8 <tool file="java-genomics-toolkit/galaxy-conf/FindBoundaryNucleosomes.xml" />
9 <tool file="java-genomics-toolkit/galaxy-conf/GreedyCaller.xml" />
10 <tool file="java-genomics-toolkit/galaxy-conf/MapDyads.xml" />
11 <tool file="java-genomics-toolkit/galaxy-conf/NRLCalculator.xml" />
12 <tool file="java-genomics-toolkit/galaxy-conf/Phasogram.xml" />
13 </section>
14 <section name="NGS" id="java-genomics-toolkit-ngs">
15 <tool file="java-genomics-toolkit/other-tools/Autocorrelation.xml" />
16 <tool file="java-genomics-toolkit/galaxy-conf/BaseAlignCounts.xml" />
17 <tool file="java-genomics-toolkit/galaxy-conf/FindAbsoluteMaxima.xml" />
18 <tool file="java-genomics-toolkit/galaxy-conf/IntervalLengthDistribution.xml" />
19 <tool file="java-genomics-toolkit/galaxy-conf/IntervalStats.xml" />
20 <tool file="java-genomics-toolkit/galaxy-conf/PowerSpectrum.xml" />
21 <tool file="java-genomics-toolkit/galaxy-conf/RollingReadLength.xml" />
22 </section>
23 <section name="WigMath" id="java-genomics-toolkit-wigmath">
24 <tool file="java-genomics-toolkit/galaxy-conf/Add.xml" />
25 <tool file="java-genomics-toolkit/galaxy-conf/Average.xml" />
26 <tool file="java-genomics-toolkit/galaxy-conf/Divide.xml" />
27 <tool file="java-genomics-toolkit/galaxy-conf/GaussianSmooth.xml" />
28 <tool file="java-genomics-toolkit/galaxy-conf/LogTransform.xml" />
29 <tool file="java-genomics-toolkit/galaxy-conf/MovingAverageSmooth.xml" />
30 <tool file="java-genomics-toolkit/galaxy-conf/Multiply.xml" />
31 <tool file="java-genomics-toolkit/galaxy-conf/Scale.xml" />
32 <tool file="java-genomics-toolkit/galaxy-conf/Subtract.xml" />
33 <tool file="java-genomics-toolkit/galaxy-conf/WigSummary.xml" />
34 <tool file="java-genomics-toolkit/galaxy-conf/ZScore.xml" />
35 </section>
36 <section name="Visualization" id="java-genomics-toolkit-visualization">
37 <tool file="java-genomics-toolkit/galaxy-conf/IntervalAverager.xml" />
38 <tool file="java-genomics-toolkit/galaxy-conf/KMeans.xml" />
39 <tool file="java-genomics-toolkit/galaxy-conf/MatrixAligner.xml" />
40 <tool file="java-genomics-toolkit/galaxy-conf/StripMatrix.xml" />
41 </section>