Mercurial > repos > timpalpant > java_genomics_toolkit

annotate java-genomics-toolkit/galaxyToolConf.xml @ 0:1daf3026d231

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author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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1 <!-- Add to galaxy/tool_conf.xml within the <toolbox></toolbox> section -->
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2 <label name="Java Genomics Toolkit" />
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3 <section name="Converters" id="java-genomics-toolkit-converters">
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4 <tool file="java-genomics-toolkit/galaxy-conf/IntervalToWig.xml" />
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5 <tool file="java-genomics-toolkit/galaxy-conf/RomanNumeralize.xml" />
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6 </section>
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7 <section name="Nucleosomes" id="java-genomics-toolkit-nucleosomes">
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8 <tool file="java-genomics-toolkit/galaxy-conf/FindBoundaryNucleosomes.xml" />
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9 <tool file="java-genomics-toolkit/galaxy-conf/GreedyCaller.xml" />
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10 <tool file="java-genomics-toolkit/galaxy-conf/MapDyads.xml" />
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11 <tool file="java-genomics-toolkit/galaxy-conf/NRLCalculator.xml" />
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12 <tool file="java-genomics-toolkit/galaxy-conf/Phasogram.xml" />
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13 </section>
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14 <section name="NGS" id="java-genomics-toolkit-ngs">
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15 <tool file="java-genomics-toolkit/other-tools/Autocorrelation.xml" />
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16 <tool file="java-genomics-toolkit/galaxy-conf/BaseAlignCounts.xml" />
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17 <tool file="java-genomics-toolkit/galaxy-conf/FindAbsoluteMaxima.xml" />
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18 <tool file="java-genomics-toolkit/galaxy-conf/IntervalLengthDistribution.xml" />
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19 <tool file="java-genomics-toolkit/galaxy-conf/IntervalStats.xml" />
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20 <tool file="java-genomics-toolkit/galaxy-conf/PowerSpectrum.xml" />
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21 <tool file="java-genomics-toolkit/galaxy-conf/RollingReadLength.xml" />
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22 </section>
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23 <section name="WigMath" id="java-genomics-toolkit-wigmath">
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24 <tool file="java-genomics-toolkit/galaxy-conf/Add.xml" />
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25 <tool file="java-genomics-toolkit/galaxy-conf/Average.xml" />
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26 <tool file="java-genomics-toolkit/galaxy-conf/Divide.xml" />
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27 <tool file="java-genomics-toolkit/galaxy-conf/GaussianSmooth.xml" />
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28 <tool file="java-genomics-toolkit/galaxy-conf/LogTransform.xml" />
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29 <tool file="java-genomics-toolkit/galaxy-conf/MovingAverageSmooth.xml" />
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30 <tool file="java-genomics-toolkit/galaxy-conf/Multiply.xml" />
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31 <tool file="java-genomics-toolkit/galaxy-conf/Scale.xml" />
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32 <tool file="java-genomics-toolkit/galaxy-conf/Subtract.xml" />
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33 <tool file="java-genomics-toolkit/galaxy-conf/WigSummary.xml" />
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34 <tool file="java-genomics-toolkit/galaxy-conf/ZScore.xml" />
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35 </section>
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36 <section name="Visualization" id="java-genomics-toolkit-visualization">
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37 <tool file="java-genomics-toolkit/galaxy-conf/IntervalAverager.xml" />
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38 <tool file="java-genomics-toolkit/galaxy-conf/KMeans.xml" />
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39 <tool file="java-genomics-toolkit/galaxy-conf/MatrixAligner.xml" />
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40 <tool file="java-genomics-toolkit/galaxy-conf/StripMatrix.xml" />
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41 </section>