Mercurial > repos > timpalpant > java_genomics_toolkit

comparison java-genomics-toolkit/src/edu/unc/config/GalaxyConfig.java @ 0:1daf3026d231

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Upload alpha version
author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:1daf3026d231
1 package edu.unc.config;
2
3 import java.io.IOException;
4 import java.nio.file.Path;
5
6 import javax.xml.parsers.DocumentBuilder;
7 import javax.xml.parsers.DocumentBuilderFactory;
8 import javax.xml.parsers.ParserConfigurationException;
9
10 import org.w3c.dom.Document;
11 import org.xml.sax.SAXException;
12
13 public class GalaxyConfig {
14
15 /**
16 * Parse a Galaxy configuration file
17 * @param p
18 * @return
19 * @throws ParserConfigurationException
20 * @throws IOException
21 * @throws SAXException
22 */
23 public static GalaxyConfig parse(Path p) throws ParserConfigurationException, SAXException, IOException {
24 DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance();
25 DocumentBuilder dBuilder = dbFactory.newDocumentBuilder();
26 Document doc = dBuilder.parse(p.toFile());
27 return parse(doc);
28 }
29
30 /**
31 * Parse a Galaxy configuration XML
32 * @param doc
33 * @return
34 */
35 public static GalaxyConfig parse(Document doc) {
36 GalaxyConfig config = new GalaxyConfig();
37
38 // TODO Implement parser
39
40 return config;
41 }
42 }