Mercurial > repos > timpalpant > java_genomics_toolkit

comparison java-genomics-toolkit/src/edu/unc/genomics/WigFileConverter.java @ 0:1daf3026d231

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Upload alpha version
author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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-1:000000000000 0:1daf3026d231
1 package edu.unc.genomics;
2
3 import java.io.IOException;
4 import java.nio.file.Path;
5
6 import com.beust.jcommander.IStringConverter;
7 import com.beust.jcommander.ParameterException;
8
9 import edu.unc.genomics.io.WigFile;
10 import edu.unc.genomics.io.WigFileException;
11
12 /**
13 * @author timpalpant
14 *
15 */
16 public class WigFileConverter implements IStringConverter<WigFile> {
17
18 @Override
19 public WigFile convert(String value) throws ParameterException {
20 PathConverter converter = new PathConverter();
21 Path p = converter.convert(value);
22 try {
23 return WigFile.autodetect(p);
24 } catch (WigFileException | IOException e) {
25 throw new ParameterException("Error autodetecting and initializing BigWig/Wig file");
26 }
27 }
28
29 }