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1 package edu.unc.genomics;
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2
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3 import java.io.IOException;
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4 import java.nio.file.Path;
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5
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6 import com.beust.jcommander.IStringConverter;
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7 import com.beust.jcommander.ParameterException;
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8
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9 import edu.unc.genomics.io.WigFile;
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10 import edu.unc.genomics.io.WigFileException;
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11
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12 /**
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13 * @author timpalpant
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14 *
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15 */
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16 public class WigFileConverter implements IStringConverter<WigFile> {
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17
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18 @Override
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19 public WigFile convert(String value) throws ParameterException {
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20 PathConverter converter = new PathConverter();
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21 Path p = converter.convert(value);
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22 try {
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23 return WigFile.autodetect(p);
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24 } catch (WigFileException | IOException e) {
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25 throw new ParameterException("Error autodetecting and initializing BigWig/Wig file");
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26 }
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27 }
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28
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29 }
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