Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/IntervalLengthDistribution.xml @ 12:81d5b81fb3c2 draft
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
| author | timpalpant |
|---|---|
| date | Wed, 25 Apr 2012 16:53:48 -0400 |
| parents | 4b32ed5d4a1b |
| children | eb53be9a09f4 |
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| 11:b1952a90d4bf | 12:81d5b81fb3c2 |
|---|---|
| 7 <outputs> | 7 <outputs> |
| 8 <data format="tabular" name="output" /> | 8 <data format="tabular" name="output" /> |
| 9 </outputs> | 9 </outputs> |
| 10 | 10 |
| 11 <help> | 11 <help> |
| 12 | |
| 13 This tool calculates the distribution of interval lengths from a list of intervals or reads in SAM, BAM, Bed, BedGraph, or GFF format. | |
| 14 | |
| 15 .. class:: warningmark | |
| 16 | |
| 17 For paired-end sequencing reads, the length is the length of the fragment (5' end of read 1 to 5' end of read 2) | |
| 18 | |
| 12 </help> | 19 </help> |
| 13 </tool> | 20 </tool> |