Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/IntervalLengthDistribution.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents 4b32ed5d4a1b
children eb53be9a09f4
line wrap: on
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--- a/galaxy-conf/IntervalLengthDistribution.xml	Mon Apr 09 11:50:23 2012 -0400
+++ b/galaxy-conf/IntervalLengthDistribution.xml	Wed Apr 25 16:53:48 2012 -0400
@@ -9,5 +9,12 @@
   </outputs>
   
 <help>
+  
+This tool calculates the distribution of interval lengths from a list of intervals or reads in SAM, BAM, Bed, BedGraph, or GFF format.
+
+.. class:: warningmark
+
+For paired-end sequencing reads, the length is the length of the fragment (5' end of read 1 to 5' end of read 2)
+
 </help>
 </tool>