Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/matrix2png.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents b1952a90d4bf
children
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11:b1952a90d4bf 12:81d5b81fb3c2
93 <outputs> 93 <outputs>
94 <data name="output" format="png" /> 94 <data name="output" format="png" />
95 </outputs> 95 </outputs>
96 96
97 <help> 97 <help>
98 .. class:: warningmark
99 98
100 This tool requires that matrix2png be available in Galaxy's PATH. 99 .. class:: warningmark
101 100
102 .. class:: warningmark 101 This tool requires that matrix2png be installed and available in Galaxy's PATH.
103 102
104 This tool requires tabular data with column AND row headers. For more information about the required format and usage instructions, see http://bioinformatics.ubc.ca/matrix2png/dataformat.html 103 .. class:: warningmark
105 104
106 .. class:: warningmark 105 This tool requires tabular data with column AND row headers. For more information about the required format and usage instructions, see the matrix2png_ website.
107 106
108 It is recommended to specify the colorspace range. 107 .. _matrix2png: http://bioinformatics.ubc.ca/matrix2png/dataformat.html
108
109 .. class:: warningmark
110
111 It is recommended to specify the colorspace range since outliers will often skew it otherwise.
112
109 </help> 113 </help>
110 </tool> 114 </tool>