Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/matrix2png.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents b1952a90d4bf
children
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--- a/galaxy-conf/matrix2png.xml	Mon Apr 09 11:50:23 2012 -0400
+++ b/galaxy-conf/matrix2png.xml	Wed Apr 25 16:53:48 2012 -0400
@@ -95,16 +95,20 @@
   </outputs>
   
   <help>
-    .. class:: warningmark
     
-    This tool requires that matrix2png be available in Galaxy's PATH.
-    
-    .. class:: warningmark
-    
-    This tool requires tabular data with column AND row headers. For more information about the required format and usage instructions, see http://bioinformatics.ubc.ca/matrix2png/dataformat.html
-    
-    .. class:: warningmark
-    
-    It is recommended to specify the colorspace range.
+.. class:: warningmark
+
+This tool requires that matrix2png be installed and available in Galaxy's PATH.
+
+.. class:: warningmark
+
+This tool requires tabular data with column AND row headers. For more information about the required format and usage instructions, see the matrix2png_ website.
+
+.. _matrix2png: http://bioinformatics.ubc.ca/matrix2png/dataformat.html
+
+.. class:: warningmark
+
+It is recommended to specify the colorspace range since outliers will often skew it otherwise.
+
   </help>
 </tool>