Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/galaxyToolRunner.sh @ 20:9d56b5b85740 draft
Reuploaded to see if tools get loaded correctly this time.
| author | timpalpant |
|---|---|
| date | Fri, 15 Jun 2012 15:10:26 -0400 |
| parents | |
| children | b43c420a6135 |
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| 19:8ad390e82b92 | 20:9d56b5b85740 |
|---|---|
| 1 #!/usr/bin/env bash | |
| 2 | |
| 3 if [ $# -eq 0 ] | |
| 4 then | |
| 5 echo "USAGE: galaxyToolRunner.sh APPNAME [ARGS]"; | |
| 6 exit; | |
| 7 fi | |
| 8 | |
| 9 # Verify that the user has Java 7 installed | |
| 10 # Otherwise there will be an obscure UnsupportedClassVersion error | |
| 11 version=$(java -version 2>&1 | awk -F '"' '/version/ {print $2}') | |
| 12 if [[ "$version" < "1.7" ]]; then | |
| 13 echo "Need Java 7 or greater. You have Java $version installed." | |
| 14 exit | |
| 15 fi | |
| 16 | |
| 17 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | |
| 18 java -Dlog4j.configuration=log4j.properties -cp $DIR:$DIR/../build:$DIR/../dist/*:$DIR/../lib/* edu.unc.genomics."$@" |