Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/GeneTrackToBedGraph.xml @ 11:b1952a90d4bf
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| author | timpalpant |
|---|---|
| date | Mon, 09 Apr 2012 11:50:23 -0400 |
| parents | |
| children | 81d5b81fb3c2 |
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| 10:d063d22f4e80 | 11:b1952a90d4bf |
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| 1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0"> | |
| 2 <description>converter</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="genetrack" label="Input GeneTrack index" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data name="output" format="bedgraph" metadata_source="input" /> | |
| 9 </outputs> | |
| 10 | |
| 11 <help> | |
| 12 | |
| 13 .. class:: warningmark | |
| 14 | |
| 15 This tool will sum the counts from the forward and reverse strands in a GeneTrack index to create a BedGraph file. | |
| 16 | |
| 17 .. class:: warningmark | |
| 18 | |
| 19 This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. | |
| 20 </help> | |
| 21 </tool> |