Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/FastqIlluminaToSanger.xml @ 13:eb53be9a09f4 draft
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author | timpalpant |
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date | Sat, 19 May 2012 10:36:45 -0400 |
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children | 3e477c7e0e73 |
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12:81d5b81fb3c2 | 13:eb53be9a09f4 |
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1 <tool id="FastqIlluminaToSanger" name="Convert Fastq qualities" version="1.0.0"> | |
2 <description>from Illumina to Sanger</description> | |
3 <command interpreter="sh">galaxyToolRunner.sh converters.FastqIlluminaToSanger -i $input -o $output</command> | |
4 <inputs> | |
5 <param name="input" type="data" format="fastqillumina" label="FASTQ, Illumina qualities" /> | |
6 </inputs> | |
7 <outputs> | |
8 <data name="output" format="fastqsanger" metadata_source="input" /> | |
9 </outputs> | |
10 <tests> | |
11 <test> | |
12 <param name="input" value="test.fastqillumina" ftype="fastqillumina"/> | |
13 <output name="output" file="test.fastqsanger"/> | |
14 </test> | |
15 </tests> | |
16 <help> | |
17 | |
18 This tool will convert a FASTQ file with ASCII quality scores encoded in Illumina 1.3 format (Phred+64) to Sanger format (Phred+33). It is a simpler, faster version of the FASTQ Groomer. | |
19 | |
20 .. class:: warningmark | |
21 | |
22 This tool requires fastqillumina formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. | |
23 | |
24 </help> | |
25 </tool> |