<tool id="FastqIlluminaToSanger" name="Convert Fastq qualities" version="1.0.0">
  <description>from Illumina to Sanger</description>
  <command interpreter="sh">galaxyToolRunner.sh converters.FastqIlluminaToSanger -i $input -o $output</command>
  <inputs>
      <param name="input" type="data" format="fastqillumina" label="FASTQ, Illumina qualities" />
  </inputs>
  <outputs>
      <data name="output" format="fastqsanger" metadata_source="input" />
  </outputs>
  <tests>
	  <test>
	    <param name="input" value="test.fastqillumina" ftype="fastqillumina"/>
	    <output name="output" file="test.fastqsanger"/>
      </test>
  </tests>
<help>

This tool will convert a FASTQ file with ASCII quality scores encoded in Illumina 1.3 format (Phred+64) to Sanger format (Phred+33). It is a simpler, faster version of the FASTQ Groomer.

.. class:: warningmark
	
This tool requires fastqillumina formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.

</help>
</tool>