Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/FastqIlluminaToSanger.xml @ 13:eb53be9a09f4 draft
Uploaded
| author | timpalpant |
|---|---|
| date | Sat, 19 May 2012 10:36:45 -0400 |
| parents | |
| children | 3e477c7e0e73 |
comparison
equal
deleted
inserted
replaced
| 12:81d5b81fb3c2 | 13:eb53be9a09f4 |
|---|---|
| 1 <tool id="FastqIlluminaToSanger" name="Convert Fastq qualities" version="1.0.0"> | |
| 2 <description>from Illumina to Sanger</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh converters.FastqIlluminaToSanger -i $input -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="fastqillumina" label="FASTQ, Illumina qualities" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data name="output" format="fastqsanger" metadata_source="input" /> | |
| 9 </outputs> | |
| 10 <tests> | |
| 11 <test> | |
| 12 <param name="input" value="test.fastqillumina" ftype="fastqillumina"/> | |
| 13 <output name="output" file="test.fastqsanger"/> | |
| 14 </test> | |
| 15 </tests> | |
| 16 <help> | |
| 17 | |
| 18 This tool will convert a FASTQ file with ASCII quality scores encoded in Illumina 1.3 format (Phred+64) to Sanger format (Phred+33). It is a simpler, faster version of the FASTQ Groomer. | |
| 19 | |
| 20 .. class:: warningmark | |
| 21 | |
| 22 This tool requires fastqillumina formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. | |
| 23 | |
| 24 </help> | |
| 25 </tool> |