Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/FindOutlierRegions.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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12:81d5b81fb3c2 13:eb53be9a09f4
1 <tool id="WigFindOutliers" name="Find outlier regions" version="1.0.0"> 1 <tool id="WigFindOutliers" name="Find outlier regions" version="1.0.0">
2 <description>such as CNVs</description> 2 <description>such as CNVs</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.FindOutlierRegions -i $input -w $window -t $threshold -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh ngs.FindOutlierRegions -i $input -w $window -t $threshold $below -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="bigwig,wig" name="input" type="data" label="Input data" /> 5 <param format="bigwig,wig" name="input" type="data" label="Input data" />
6 <param name="window" type="integer" value="150" label="Window size" /> 6 <param name="window" type="integer" value="150" label="Window size" />
7 <param name="threshold" type="float" value="3" label="Threshold (fold times the mean)" /> 7 <param name="threshold" type="float" value="3" label="Threshold (fold times the mean)" />
8 <param name="below" type="boolean" checked="false" truevalue="-b" falsevalue="" label="Search for outliers below the threshold" />
8 </inputs> 9 </inputs>
9 <outputs> 10 <outputs>
10 <data format="bed" name="output" metadata_source="input" /> 11 <data format="bed" name="output" metadata_source="input" />
11 </outputs> 12 </outputs>
12 13