Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/FindOutlierRegions.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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--- a/galaxy-conf/FindOutlierRegions.xml	Wed Apr 25 16:53:48 2012 -0400
+++ b/galaxy-conf/FindOutlierRegions.xml	Sat May 19 10:36:45 2012 -0400
@@ -1,10 +1,11 @@
 <tool id="WigFindOutliers" name="Find outlier regions" version="1.0.0">
   <description>such as CNVs</description>
-  <command interpreter="sh">galaxyToolRunner.sh ngs.FindOutlierRegions -i $input -w $window -t $threshold -o $output</command>
+  <command interpreter="sh">galaxyToolRunner.sh ngs.FindOutlierRegions -i $input -w $window -t $threshold $below -o $output</command>
   <inputs>
       <param format="bigwig,wig" name="input" type="data" label="Input data" />
       <param name="window" type="integer" value="150" label="Window size" />
       <param name="threshold" type="float" value="3" label="Threshold (fold times the mean)" />
+      <param name="below" type="boolean" checked="false" truevalue="-b" falsevalue="" label="Search for outliers below the threshold" />
   </inputs>
   <outputs>
       <data format="bed" name="output" metadata_source="input" />