Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/IntervalLengthDistribution.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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12:81d5b81fb3c2 13:eb53be9a09f4
1 <tool id="IntervalLengthDistribution" name="Make histogram" version="1.0.0"> 1 <tool id="IntervalLengthDistribution" name="Make histogram" version="1.0.0">
2 <description>of read lengths</description> 2 <description>of read lengths</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.IntervalLengthDistribution -i $input -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh ngs.IntervalLengthDistribution -i $input $freq -o $output</command>
4 <inputs> 4 <inputs>
5 <param name="input" type="data" format="sam,bam,bed,bedgraph,gff" label="Reads/Intervals" /> 5 <param name="input" type="data" format="sam,bam,bed,bedgraph,gff" label="Reads/Intervals" />
6 <param name="freq" type="boolean" checked="false" truevalue="-f" falsevalue="" label="Output normalized frequencies rather than counts" />
6 </inputs> 7 </inputs>
7 <outputs> 8 <outputs>
8 <data format="tabular" name="output" /> 9 <data format="tabular" name="output" />
9 </outputs> 10 </outputs>
10 11