Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/IntervalLengthDistribution.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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line diff
--- a/galaxy-conf/IntervalLengthDistribution.xml	Wed Apr 25 16:53:48 2012 -0400
+++ b/galaxy-conf/IntervalLengthDistribution.xml	Sat May 19 10:36:45 2012 -0400
@@ -1,8 +1,9 @@
 <tool id="IntervalLengthDistribution" name="Make histogram" version="1.0.0">
   <description>of read lengths</description>
-  <command interpreter="sh">galaxyToolRunner.sh ngs.IntervalLengthDistribution -i $input -o $output</command>
+  <command interpreter="sh">galaxyToolRunner.sh ngs.IntervalLengthDistribution -i $input $freq -o $output</command>
   <inputs>
       <param name="input" type="data" format="sam,bam,bed,bedgraph,gff" label="Reads/Intervals" />
+      <param name="freq" type="boolean" checked="false" truevalue="-f" falsevalue="" label="Output normalized frequencies rather than counts" />
   </inputs>
   <outputs>
       <data format="tabular" name="output" />