Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/IntervalLengthDistribution.xml @ 13:eb53be9a09f4 draft
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author | timpalpant |
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date | Sat, 19 May 2012 10:36:45 -0400 |
parents | 81d5b81fb3c2 |
children | 3e477c7e0e73 |
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12:81d5b81fb3c2 | 13:eb53be9a09f4 |
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1 <tool id="IntervalLengthDistribution" name="Make histogram" version="1.0.0"> | 1 <tool id="IntervalLengthDistribution" name="Make histogram" version="1.0.0"> |
2 <description>of read lengths</description> | 2 <description>of read lengths</description> |
3 <command interpreter="sh">galaxyToolRunner.sh ngs.IntervalLengthDistribution -i $input -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh ngs.IntervalLengthDistribution -i $input $freq -o $output</command> |
4 <inputs> | 4 <inputs> |
5 <param name="input" type="data" format="sam,bam,bed,bedgraph,gff" label="Reads/Intervals" /> | 5 <param name="input" type="data" format="sam,bam,bed,bedgraph,gff" label="Reads/Intervals" /> |
6 <param name="freq" type="boolean" checked="false" truevalue="-f" falsevalue="" label="Output normalized frequencies rather than counts" /> | |
6 </inputs> | 7 </inputs> |
7 <outputs> | 8 <outputs> |
8 <data format="tabular" name="output" /> | 9 <data format="tabular" name="output" /> |
9 </outputs> | 10 </outputs> |
10 | 11 |