Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/Phasogram.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
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12:81d5b81fb3c2 13:eb53be9a09f4
9 <data name="output" format="tabular" /> 9 <data name="output" format="tabular" />
10 </outputs> 10 </outputs>
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12 <help> 12 <help>
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14 This tool calculates the phase distribution of sequencing data. It can be used to identify genome-wide periodicities. Phase counts are aggregated for each base pair across the genome. The tool is a reimplementation of the algorithm described in (Valouev et al. 2011). 14 This tool calculates the phase distribution of sequencing data. It can be used to identify genome-wide periodicities. Phase counts are aggregated for each base pair across the genome. This is equivalent to summing the autocovariance of a sliding window across the genome. The tool is a reimplementation of the algorithm described in (Valouev et al. 2011).
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16 .. class:: infomark 16 .. class:: infomark
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18 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly. 18 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
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