Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/ZScore.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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12:81d5b81fb3c2 13:eb53be9a09f4
6 </inputs> 6 </inputs>
7 <outputs> 7 <outputs>
8 <data format="wig" name="output" metadata_source="input" /> 8 <data format="wig" name="output" metadata_source="input" />
9 </outputs> 9 </outputs>
10 <tests> 10 <tests>
11 <!--<test> 11 <test>
12 <param name="input" value="wigmath.input1"/> 12 <param name="input" value="wigmath1.wig"/>
13 <param name="dbkey" value="sacCer2"/> 13 <output name="output" file="zscorer1.wig"/>
14 <output name="output" file="zscorer.output1"/>
15 </test> 14 </test>
16 <test> 15 <test>
17 <param name="input" value="wigmath.input1.bw"/> 16 <param name="input" value="wigmath2.wig"/>
18 <param name="dbkey" value="sacCer2"/> 17 <output name="output" file="zscorer2.wig"/>
19 <output name="output" file="zscorer.output1"/>
20 </test> 18 </test>
21 <test> 19 <test>
22 <param name="input" value="wigmath.input2"/> 20 <param name="input" value="wigmath3.wig"/>
23 <param name="dbkey" value="sacCer2"/> 21 <output name="output" file="zscorer3.wig"/>
24 <output name="output" file="zscorer.output2"/>
25 </test> 22 </test>
26 <test> 23 <test>
27 <param name="input" value="wigmath.input2.bw"/> 24 <param name="input" value="wigmath1.bw"/>
28 <param name="dbkey" value="sacCer2"/> 25 <output name="output" file="zscorer4.wig"/>
29 <output name="output" file="zscorer.output2"/>
30 </test> 26 </test>
31 <test> 27 <test>
32 <param name="input" value="wigmath.input3"/> 28 <param name="input" value="wigmath2.bw"/>
33 <param name="dbkey" value="sacCer2"/> 29 <output name="output" file="zscorer5.wig"/>
34 <output name="output" file="zscorer.output3"/>
35 </test> 30 </test>
36 <test> 31 <test>
37 <param name="input" value="wigmath.input3.bw"/> 32 <param name="input" value="wigmath3.bw"/>
38 <param name="dbkey" value="sacCer2"/> 33 <output name="output" file="zscorer6.wig"/>
39 <output name="output" file="zscorer.output3"/> 34 </test>
40 </test>-->
41 </tests> 35 </tests>
42 36
43 <help> 37 <help>
44 38
45 This tool will compute normal scores (Z-scores) for each of the values in a Wig file. For each base pair, the Z-scored value is equal to the deviance from the mean divided by the standard deviation (i.e. the number of standard deviations a value is away from the mean). The output file should have mean 0 and standard deviation 1. 39 This tool will compute normal scores (Z-scores) for each of the values in a Wig file. For each base pair, the Z-scored value is equal to the deviance from the mean divided by the standard deviation (i.e. the number of standard deviations a value is away from the mean). The output file should have mean 0 and standard deviation 1.