Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/ZScore.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents eb53be9a09f4
children
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--- a/galaxy-conf/ZScore.xml	Sat May 19 10:40:16 2012 -0400
+++ b/galaxy-conf/ZScore.xml	Sat Jun 09 16:03:59 2012 -0400
@@ -1,8 +1,9 @@
-<tool id="WigZScore" name="Z-Score" version="1.0.0">
+<tool id="WigZScore" name="Z-Score" version="1.2.0">
   <description>a (Big)Wig file</description>
-  <command interpreter="sh">galaxyToolRunner.sh wigmath.ZScore -i $input -o $output</command>
+  <command interpreter="sh">galaxyToolRunner.sh wigmath.ZScore -i $input $chr -o $output</command>
   <inputs>
       <param format="bigwig,wig" name="input" type="data" label="Z-score the data in" />
+      <param name="chr" type="boolean" checked="false" truevalue="-c" falsevalue="" label="Z-score chromosomes individually" />
   </inputs>
   <outputs>
       <data format="wig" name="output" metadata_source="input" />