diff galaxy-conf/FindAbsoluteMaxima.xml @ 4:4b32ed5d4a1b

Uploaded
author timpalpant
date Tue, 14 Feb 2012 00:59:33 -0500
parents
children 81d5b81fb3c2
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/FindAbsoluteMaxima.xml	Tue Feb 14 00:59:33 2012 -0500
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+<tool id="FindWigMaxima" name="Find absolute maxima" version="1.0.0">
+  <description>in windows</description>
+  <command interpreter="sh">
+    galaxyToolRunner.sh ngs.FindAbsoluteMaxima -l $window -o $output
+  	  #for $input in $inputs
+        ${input.file}
+      #end for
+  </command>
+  <inputs>
+    <repeat name="inputs" title="(Big)Wig file">
+      <param name="file" type="data" format="bigwig,wig" />
+    </repeat>
+    <param name="window" type="data" format="bed,bedgraph,gff" label="Windows to find maxima in" />
+  </inputs>
+  <outputs>
+    <data name="output" format="tabular" />
+  </outputs>
+  
+  <help>
+    .. class:: warningmark
+    
+    This tool requires input data in Wig format. Regions should be specified as Bed, BedGraph, or GFF format
+  </help>
+</tool>