Mercurial > repos > timpalpant > java_genomics_toolkit
diff galaxy-conf/RollingReadLength.xml @ 4:4b32ed5d4a1b
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author | timpalpant |
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date | Tue, 14 Feb 2012 00:59:33 -0500 |
parents | |
children | 4fc118372ae7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy-conf/RollingReadLength.xml Tue Feb 14 00:59:33 2012 -0500 @@ -0,0 +1,20 @@ +<tool id="RollingReadLength" name="Compute read length" version="1.0.0"> + <description>from paired-end sequencing reads</description> + <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> + <inputs> + <param format="bam" name="input" type="data" label="Mapped reads" /> + </inputs> + <outputs> + <data format="wig" name="output" /> + </outputs> + +<help> +.. class:: warningmark + +This tool requires paired-end BAM formatted data. Using single-end data will result in a constant read length. + +.. class:: warningmark + +This tool was contributed by Timothy Palpant. +</help> +</tool>