Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/galaxyToolRunner.sh @ 2:e16016635b2a

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author timpalpant
date Mon, 13 Feb 2012 22:12:06 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/galaxyToolRunner.sh	Mon Feb 13 22:12:06 2012 -0500
@@ -0,0 +1,14 @@
+#!/usr/bin/env bash
+
+if [ $# -eq 0 ]
+then
+  echo "USAGE: galaxyToolRunner.sh APPNAME [ARGS]";
+  exit;
+fi
+
+if [ "$1" = "list" ]
+then
+  find src/edu/unc/genomics/**/*.java -exec basename -s .java {} \;
+fi
+
+java -Dlog4j.configuration=log4j.properties -cp .:../build:../lib/* edu.unc.genomics."$@"
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