<tool id="ExtractDataFromWig" name="Extract data from a Wig file" version="1.0.0">
  <description>for a genomic interval</description>
  <command interpreter="bash">
  	galaxyToolRunner.sh ngs.ExtractDataFromRegion --chr $chr --start $start --stop $stop -o $output $file1
  	  #for $input in $inputs
        ${input.file}
      #end for
  </command>
  <inputs>
  	  <param name="file1" label="(Big)Wig file" type="data" format="bigwig,wig" />
      <repeat name="inputs" title="(Big)Wig file">
        <param name="file" type="data" format="bigwig,wig" />
      </repeat>
      <param name="chr" type="text" label="Chromosome" />
      <param name="start" type="integer" value="1" label="Start base pair" />
      <param name="stop" type="integer" value="1000" label="Stop base pair" />
  </inputs>
  <outputs>
      <data format="tabular" name="output" />
  </outputs>
  
<help>
  
This tool will extract data from Wig or BigWig file(s) for a specific region of the genome.

</help>
</tool>